Proteomics Core Lab
Committee members:
Institute of Plant and Microbial Biology
Assistant Research Specialist:
Research Assistant:
- Chin-Wen Chen
- Pei-Yi Lin
Contact phone number:
- 02-27871157 (Chuan-Chih)
- 02-27871030 (Lab)
Email:
- cchsu@gate.sinica.edu.tw (Chuan-Chih)
- pclipmb@gate.sinica.edu.tw (Lab)
Location:
- A227, Agricultural Technology Building
Proteomics tools
Skyline – A open source software for analysis of PRM/DIA data
MaxQuant – A freely-available software for searching mass spec data.
Proteome Discoverer – A Thermo Scientific software with SEQUEST HT and Mascot search algorithms.
Mascot – Online search for peptide mass fingerprint and protein ID.
Protein-protein interaction networks
String – A system-wide database for visualization of known and predicted protein-protein ienteractions .
BioGrid – A curated database of PTMs, protein, genetic and chemical interactions.
Repositories
ProteomicsDB – ProteomicsDB is a joint effort of the Technische Universität München (TUM) and SAP AG. It has a quantitative atlas of proteome, phosphoproteome, and transcriptome of 30 tissues of Arabidopsis.
ProteomeXchange – The ProteomeXchange consortium has been set up to provide a coordinated submission of MS proteomics data.