TRIM Category |
TRIM ID |
TRIM phenotype |
TOS17 ID |
TOS17 Class |
TOS17 Phenotype |
Phenotype ID, IRRI |
Observable |
PO Term ID |
Attribute |
PATO Term ID |
Trait |
TO Term ID |
Trait Value |
Development |
1 |
germination rate |
1 |
Germination |
Germination rate |
IRFGC:0050 |
Germination |
GRO:0007043 |
rate |
PATO:0007147 |
Germination rate |
TO:0000430 |
slow |
|
2 |
lethal |
2 |
Growth |
Lethal |
IRFGC:0080 |
Seedling/vegetative stage |
GRO:0007047 |
viability |
PATO:00000168 |
Seedling/vegetative vigor (Vg) |
TO:0000296 |
yellow lethal |
|
3 |
abnormal growth |
3 |
Growth |
abnormal growth |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
|
4 |
weak |
4 |
Growth |
Weak |
IRFGC:0081 |
Seedling/vegetative stage |
GRO:0007047 |
viability |
PATO:00000168 |
Seedling/vegetative vigor (Vg) |
TO:0000296 |
weak |
Leaf color |
11 |
albino |
11 |
Leaf color |
Albino |
IRFGC:0020 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
albino |
|
12 |
yellow |
12 |
Leaf color |
Yellow |
IRFGC:0021 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
chlorina |
|
12 |
yellow |
12 |
Leaf color |
Yellow |
IRFGC:0030 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
almost white |
|
13 |
dark green |
13 |
Leaf color |
Deep green leaf |
IRFGC:0022 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
dark green |
|
14 |
pale green |
14 |
Leaf color |
Pale green leaf |
IRFGC:0023 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
light green |
|
15 |
bluish green |
15 |
Leaf color |
Virescent |
IRFGC:0024 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
virescent |
|
16 |
stripe |
16 |
Leaf color |
Stripe |
IRFGC:0025 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
fine stripe |
|
16 |
stripe |
16 |
Leaf color |
Stripe |
IRFGC:0027 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
white stripe |
|
16 |
stripe |
16 |
Leaf color |
Stripe |
IRFGC:0028 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
yellow stripe |
|
16 |
stripe |
16 |
Leaf color |
Stripe |
IRFGC:0029 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
white midrib |
|
16 |
stripe |
16 |
Leaf color |
Stripe |
IRFGC:0031 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
light green stripe |
|
17 |
zebra |
17 |
Leaf color |
Zebra |
IRFGC:0026 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
zebra |
|
18 |
others |
18 |
Leaf color |
Others |
IRFGC:0006 |
Basal leaf sheath |
PO:0020040 |
color |
PATO:0000033 |
Basal leaf sheath color (BLSC) |
TO:0000367 |
purple |
|
18 |
others |
18 |
Leaf color |
Others |
IRFGC:0007 |
Basal leaf sheath |
PO:0020040 |
color |
PATO:0000033 |
Basal leaf sheath color (BLSC) |
TO:0000367 |
red |
|
18 |
others |
18 |
Leaf color |
Others |
IRFGC:0008 |
Basal leaf sheath |
PO:0020040 |
color |
PATO:0000033 |
Basal leaf sheath color (BLSC) |
TO:0000367 |
dark brown |
|
18 |
others |
18 |
Leaf color |
Others |
IRFGC:0032 |
Leaf blade |
PO:0020039 |
color |
PATO:0000033 |
Leaf blade color (LBC) |
TO:0000326 |
white edge |
Leaf morphology |
21 |
wide |
21 |
Leaf shape |
Wide leaf |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
|
22 |
narrow |
22 |
Leaf shape |
Narrow leaf |
IRFGC:0042 |
Leaf |
PO:0009025 |
width |
PATO:0000084 |
Leaf width |
TO:0000492 |
narrow |
|
23 |
long |
23 |
Leaf shape |
Long leaf |
IRFGC:0033 |
Leaf |
PO:0009025 |
length |
PATO:0010077 |
Leaf length |
TO:0000492 |
long |
|
23 |
long |
23 |
Leaf shape |
Long leaf |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
|
24 |
short |
24 |
Leaf shape |
Short leaf |
IRFGC:0034 |
Leaf |
PO:0009025 |
length |
PATO:0010077 |
Leaf length |
TO:0000492 |
short |
|
25 |
drooping |
25 |
Leaf shape |
Drooping leaf |
-- |
-- |
-- |
-- |
-- |
-- |
TO:0000206 |
leaf angle |
|
26 |
rolled |
26 |
Leaf shape |
Rolled leaf |
IRFGC:0037 |
Leaf |
PO:0009025 |
related trait |
Unknown |
Leaf related trait |
Unknown |
semi-rolled |
|
26 |
rolled |
26 |
Leaf shape |
Rolled leaf |
IRFGC:0036 |
Leaf |
PO:0009025 |
related trait |
Unknown |
Leaf related trait |
Unknown |
rolled |
|
27 |
spiral |
27 |
Leaf shape |
Spiral |
IRFGC:0038 |
Leaf |
PO:0009025 |
related trait |
Unknown |
Leaf related trait |
Unknown |
crinkled |
|
28 |
brittle |
28 |
Leaf shape |
Brittle |
IRFGC:0085 |
Stem |
PO:0009047 |
strength |
Unknown |
Stem strength |
TO:0000051 |
brittle |
|
29 |
thin lamina joint |
29 |
Leaf shape |
Lamina joint |
IRFGC:0052 |
Leaf |
PO:0009025 |
shape |
PATO:0000130 |
Leaf shape |
TO:0000492 |
-- |
|
30 |
white and withering leaf tip |
30 |
Leaf shape |
Withering |
IRFGC:0040 |
Leaf |
PO:0009025 |
senescence |
Unknown |
Leaf senescence (Sen) |
TO:0001036 |
|
|
30 |
white and withering leaf tip |
30 |
Leaf shape |
Withering |
IRFGC:0039 |
Leaf |
PO:0009025 |
related trait |
Unknown |
Leaf related trait |
Unknown |
wilted upper half |
|
31 |
others |
31 |
Leaf shape |
Others |
IRFGC:0015 |
Flag leaf |
PO:0020103 |
length |
PATO:0010077 |
Flag leaf length |
Unknown |
long |
Plant type |
41 |
semidwarf |
41 |
Height |
Semidwarf |
IRFGC:0063 |
Plant |
PO:0009011 |
height |
PATO:0000074 |
Plant height (Ht) |
TO:0000207 |
semidwarf |
|
42 |
dwarf |
42 |
Height |
Dwarf |
IRFGC:0064 |
Plant |
PO:0009011 |
height |
PATO:0000074 |
Plant height (Ht) |
TO:0000207 |
dwarf |
|
43 |
severe dwarf |
43 |
Height |
Extremely dwarf |
IRFGC:0065 |
Plant |
PO:0009011 |
height |
PATO:0000074 |
Plant height (Ht) |
TO:0000207 |
extreme dwarf |
|
44 |
long culm |
44 |
Height |
Long culm |
IRFGC:0066 |
Plant |
PO:0009011 |
height |
PATO:0000074 |
Plant height (Ht) |
TO:0000207 |
tall |
|
45 |
erect |
45 |
Height |
Erect |
IRFGC:0009 |
Culm |
PO:0009047 |
angle |
PATO:0000124 |
Culm angle (CmA) |
TO:0000427 |
erect |
|
45 |
erect |
45 |
Height |
Erect |
IRFGC:0019 |
Leaf |
PO:0009025 |
angle |
PATO:0000124 |
Leaf angle (LA) |
TO:0000206 |
erect |
|
46 |
lazy |
46 |
Height |
Lazy |
IRFGC:0011 |
Culm |
PO:0009047 |
angle |
PATO:0000124 |
Culm angle (CmA) |
TO:0000427 |
procumbent |
|
47 |
thin culm |
47 |
Height |
Thin culm |
IRFGC:0013 |
Culm |
PO:0009047 |
diameter |
Unknown |
Culm diameter |
TO:0001035 |
stem width |
|
48 |
thick culm |
48 |
Height |
Thick culm |
IRFGC:0012 |
Culm |
PO:0009047 |
diameter |
Unknown |
Culm diameter |
TO:0001035 |
stem width |
|
49 |
others |
|
-- |
-- |
IRFGC:0014 |
Culm |
PO:0009047 |
senescence |
Unknown |
Culm senescence |
Unknown |
premature |
|
49 |
others |
|
-- |
-- |
IRFGC:0086 |
Stem |
PO:0009047 |
strength |
Unknown |
Stem strength |
TO:0000051 |
stiff |
Lesion |
51 |
lesion mimic |
51 |
Mimic response |
Spl/Lesion mimic |
IRFGC:0046 |
Plant |
PO:0009011 |
response, mimic |
Unknown |
mimic response |
TO:0000063 |
lesion mimic-spl6 type |
|
51 |
lesion mimic |
51 |
Mimic response |
Spl/Lesion mimic |
IRFGC:0047 |
Plant |
PO:0009011 |
response, mimic |
Unknown |
mimic response |
TO:0000063 |
lesion mimic-uncharacterized |
|
51 |
lesion mimic |
51 |
Mimic response |
Spl/Lesion mimic |
IRFGC:0048 |
Plant |
PO:0009011 |
response, mimic |
Unknown |
mimic response |
TO:0000063 |
lesion mimic-spl11 type |
|
51 |
lesion mimic |
51 |
Mimic response |
Spl/Lesion mimic |
IRFGC:0049 |
Plant |
PO:0009011 |
response, mimic |
Unknown |
mimic response |
TO:0000063 |
lesion mimic-spl1 type |
Tiller |
61 |
high-position tiller |
61 |
Tillering |
High tillering |
IRFGC:0088 |
Tiller |
PO:0006343 |
yield |
PATO:00000153 |
Tillering ability (TI) |
TO:0000329 |
very high |
|
62 |
low-position tiller |
62 |
Tillering |
Low tillering |
IRFGC:0089 |
Tiller |
PO:0006343 |
yield |
PATO:00000153 |
Tillering ability (TI) |
TO:0000329 |
low |
|
62 |
low-position tiller |
62 |
Tillering |
Low tillering |
IRFGC:0090 |
Tiller |
PO:0006343 |
yield |
PATO:00000153 |
Tillering ability (TI) |
TO:0000329 |
very low |
|
63 |
monoculm |
63 |
Tillering |
Lazy |
IRFGC:0010 |
Culm |
PO:0009047 |
angle |
PATO:0000124 |
Culm angle (CmA) |
TO:0000427 |
spreading |
|
64 |
few panicle |
|
Tillering-- |
-- |
-- |
Tiller |
-- |
-- |
-- |
-- |
-- |
-- |
|
65 |
Many panicle |
|
Tillering |
-- |
-- |
Tiller |
-- |
-- |
-- |
-- |
-- |
-- |
Heading date |
71 |
early heading |
65 |
Heading date |
Early heading |
IRFGC:0016 |
Heading |
GRO:0007044 |
relative time |
PATO:0000147 |
Heading time |
TO:0000137 |
early |
|
72 |
late heading |
66 |
Heading date |
Late heading |
IRFGC:0017 |
Heading |
GRO:0007044 |
relative time |
PATO:0000147 |
Heading time |
TO:0000137 |
late |
|
73 |
no heading |
67 |
Heading date |
No heading |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
Glume |
75 |
abnormal hull |
71 |
Flower |
Abnormal hull |
IRFGC:0069 |
Seed |
PO:0009010 |
related trait |
Unknown |
Seed related trait |
TO:0000184 |
open hull |
|
75 |
abnormal hull |
71 |
Flower |
Abnormal hull |
IRFGC:0070 |
Seed |
PO:0009010 |
related trait |
Unknown |
Seed related trait |
TO:0000184 |
beaked hull |
|
75 |
abnormal hull |
71 |
Flower |
Abnormal hull |
IRFGC:0071 |
Seed |
PO:0009010 |
related trait |
Unknown |
Seed related trait |
TO:0000184 |
half hull |
|
75 |
abnormal hull |
71 |
Flower |
Abnormal hull |
IRFGC:0072 |
Seed |
PO:0009010 |
related trait |
Unknown |
Seed related trait |
TO:0000184 |
double palea |
|
75 |
abnormal hull |
71 |
Flower |
Abnormal hull |
IRFGC:0073 |
Seed |
PO:0009010 |
related trait |
Unknown |
Seed related trait |
TO:0000184 |
multiple lemma and palea |
|
75 |
abnormal hull |
71 |
Flower |
Abnormal hull |
IRFGC:0074 |
Seed |
PO:0009010 |
related trait |
Unknown |
Seed related trait |
TO:0000184 |
depressed palea |
|
75 |
abnormal hull |
71 |
Flower |
Abnormal hull |
IRFGC:0075 |
Seed |
PO:0009010 |
related trait |
Unknown |
Seed related trait |
TO:0000184 |
triangular |
|
76 |
abnormal floral organ |
72 |
Flower |
Abnormal floral organ |
IRFGC:0051 |
Shoot |
PO:0009006 |
abnormal |
PATO:0000004 |
Shoot growth |
TO:0000077 |
abnormal |
|
76 |
abnormal floral organ |
72 |
Flower |
Abnormal floral organ |
IRFGC:0053 |
Floret |
PO:0006318 |
shape |
PATO:0000130 |
Abnormal floral organ |
TO:0000499 |
abnormal |
|
77 |
awn |
73 |
Flower |
Awn |
IRFGC:0001 |
Awning |
PO:0006032 |
shape |
PATO:0000130 |
Awning (An) |
TO:0000072 |
long & partly awned |
|
77 |
awn |
73 |
Flower |
Awn |
IRFGC:0002 |
Awning |
PO:0006032 |
shape |
PATO:0000130 |
Awning (An) |
TO:0000072 |
short & partly awned |
|
77 |
awn |
73 |
Flower |
Awn |
IRFGC:0003 |
Awning |
PO:0006032 |
shape |
PATO:0000130 |
Awning (An) |
TO:0000072 |
awned |
|
77 |
awn |
73 |
Flower |
Awn |
IRFGC:0004 |
Awning |
PO:0006032 |
shape |
PATO:0000130 |
Awning (An) |
TO:0000072 |
long awn |
|
77 |
awn |
73 |
Flower |
Awn |
IRFGC:0005 |
Awning |
PO:0006032 |
shape |
PATO:0000130 |
Awning (An) |
TO:0000072 |
short awn |
|
78 |
abnormal glume |
74 |
Flower |
Abnormal hull |
IRFGC:0076 |
Seed |
PO:0009010 |
related trait |
Unknown |
Seed related trait |
TO:0000184 |
extra glume |
|
79 |
abnormal lemma color |
75 |
Flower |
Abnormal lemma color |
-- |
-- |
-- |
-- |
-- |
-- |
TO:0000264 |
lemma and palea color |
Panicle |
81 |
long panicle |
81 |
Panicle |
Long panicle |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
-- |
|
82 |
short panicle |
82 |
Panicle |
Short panicle |
IRFGC:0057 |
Panicle |
PO:0009049 |
length |
PATO:0010077 |
Panicle length (PnL) |
TO:0000040 |
short |
|
83 |
lax panicle |
83 |
Panicle |
Lax panicle |
IRFGC:0061 |
Panicle |
PO:0009049 |
type |
Unknown |
Panicle type (PnT) |
TO:0000089 |
open |
|
84 |
dense panicle |
84 |
Panicle |
Dense panicle |
IRFGC:0062 |
Panicle |
PO:0009049 |
type |
Unknown |
Panicle type (PnT) |
TO:0000089 |
compact |
|
85 |
vivipary |
85 |
Panicle |
Vivipary |
IRFGC:0054 |
Panicle |
PO:0009049 |
status |
Unknown |
Panicle status |
TO:0000619 |
viviparous |
|
86 |
shattering |
86 |
Panicle |
Shattering |
IRFGC:0059 |
Panicle |
PO:0009049 |
threshability |
PATO:0300094 |
Panicle threshability (Thr) |
TO:0000406 |
loose |
|
86 |
shattering |
86 |
Panicle |
Shattering |
IRFGC:0060 |
Panicle |
PO:0009049 |
threshability |
PATO:0300094 |
Panicle threshability (Thr) |
TO:0000406 |
easy |
|
87 |
neck leaf |
87 |
Panicle |
Neck leaf |
IRFGC:0058 |
Panicle |
PO:0009049 |
related trait |
Unknown |
panicle related trait |
TO: 0002691 |
peduncle length |
|
87 |
neck leaf |
87 |
Panicle |
Neck leaf |
IRFGC:0056 |
Panicle |
PO:0009049 |
exsertion |
Unknown |
Panicle exsertion (Exs) |
TO:0000165 |
partly exserted |
|
88 |
abnormal panicle |
88 |
Panicle |
Abnormal panicle shape |
IRFGC:0091 |
Internode |
PO:0020142 |
length |
PATO:0010077 |
(Uppermost) internode length |
TO:0000145 |
elongated |
|
89 |
others |
89 |
Panicle |
Abnormal panicle shape |
IRFGC:0018 |
Internode |
PO:0020142 |
length |
PATO:0010077 |
(Uppermost) internode length |
TO:0000145 |
short |
|
89 |
others |
89 |
Panicle |
Abnormal panicle shape |
IRFGC:0055 |
Panicle |
PO:0009049 |
axis |
Unknown |
Panicle axis (PnA) |
TO:0000342 |
straight |
Fertility |
91 |
sterile |
91 |
Sterility |
Sterile |
IRFGC:0082 |
Spikelet |
PO:0009051 |
fertility |
PATO:00000171 |
Spikelet fertility (SpFert) |
TO:0000180 |
completely sterile |
|
91 |
sterile |
91 |
Sterility |
Sterile |
IRFGC:0083 |
Spikelet |
PO:0009051 |
fertility |
PATO:00000171 |
Spikelet fertility (SpFert) |
TO:0000180 |
highly sterile |
|
92 |
low fertility |
92 |
Sterility |
Low Fertile |
IRFGC:0084 |
Spikelet |
PO:0009051 |
fertility |
PATO:00000171 |
Spikelet fertility (SpFert) |
TO:0000180 |
partly sterile |
Grain |
101 |
large grain |
101 |
Seed |
Large grain |
IRFGC:0077 |
Seed |
PO:0009010 |
size |
PATO:0000058 |
Seed size |
TO:0000391 |
big |
|
102 |
small grain |
102 |
Seed |
Small grain |
IRFGC:0078 |
Seed |
PO:0009010 |
size |
PATO:0000058 |
Seed size |
TO:0000391 |
small |
|
102 |
small grain |
102 |
Seed |
Small grain |
IRFGC:0041 |
Leaf |
PO:0009025 |
width |
PATO:0000084 |
Leaf width |
TO:0000492 |
wide |
|
102 |
small grain |
102 |
Seed |
Small grain |
IRFGC:0079 |
Seed |
PO:0009010 |
width |
PATO:0000084 |
Seed width |
TO:0000149 |
wide |
|
103 |
slender grain |
103 |
Seed |
Slender grain |
-- |
-- |
-- |
-- |
-- |
-- |
TO:0000411 |
seed length to width ratio |
|
104 |
others |
104 |
Seed |
Others |
IRFGC:0068 |
Seed |
PO:0009010 |
length |
PATO:0010077 |
Seed length |
TO:0000146 |
short |
|
104 |
others |
104 |
Seed |
Others |
IRFGC:0043 |
Floret |
PO:0006318 |
color |
PATO:0000033 |
Lemma and palea color (LmPC) |
TO:0000264 |
brown |
|
104 |
others |
104 |
Seed |
Others |
IRFGC:0044 |
Floret |
PO:0006318 |
color |
PATO:0000033 |
Lemma and palea color (LmPC) |
TO:0000264 |
gold |
|
104 |
others |
104 |
Seed |
Others |
IRFGC:0045 |
Floret |
PO:0006318 |
color |
PATO:0000033 |
Lemma and palea color (LmPC) |
TO:0000264 |
brown spots on straw |
|
104 |
others |
104 |
Seed |
Others |
IRFGC:0067 |
Seed |
PO:0009010 |
length |
PATO:0010077 |
Seed length |
TO:0000146 |
long |
|
104 |
others |
104 |
Seed |
Others |
IRFGC:0087 |
Sterile lemma |
PO:0009040 |
length |
PATO:0010077 |
Sterile lemma length (SLmL) |
TO:0000240 |
long |